PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14503_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 309aa    MW: 33496.5 Da    PI: 10.2209
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14503_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1244.8e-3958119263
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                  ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+sss
  RrC14503_p1  58 PQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSS 119
                  6899******************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2557109IPR003851Zinc finger, Dof-type
PfamPF027014.7E-3360116IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.90162116IPR003851Zinc finger, Dof-type
PROSITE patternPS01361064100IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEHIMIPNNN THQSNTTSNA RPNTILTSSG GVSAAGATVS GVSNNNNTPV VVERKARPQE  60
KLNCPRCNST NTKFCYYNNY SLTQPRYFCK GCRRYWTEGG SLRNVPVGGS SRKNKRSSSS  120
SSSNILQTTP SSHGLTTTLP DLNPPIIFSN QIPNKSKGSQ DLNLLSFPVM QDQHHHQHVH  180
MSKFLQMHKM EGNGNMTHQQ PSSSSSLYGS SSSPVSALEL LRTGVNVSSR SGINAFMPSG  240
PMMDSSNNVM YTSSGFPTMG LDTTTTTIVL VMLIVIIIKK IHGNNNNNPS PNNGYWSGMF  300
STTGGGSSW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528590.0AK352859.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294447.11e-154hypothetical protein CARUB_v10023459mg
SwissprotQ9ZPY01e-128DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBLR0HPY21e-154R0HPY2_9BRAS; Uncharacterized protein
STRINGBra039272.1-P1e-148(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25282673
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46590.13e-93Dof family protein